Search   for 
Find Your Gene ·  Publications ·  Tools ·  Expression Atlases ·  Feedback
Login ID:
Password:
Create a new account
Species
Arabidopsis
Barley
Citrus
Cotton
Fusarium
Grape
Maize
Medicago
Poplar
Rice
Soybean
Sugarcane
Tomato
Tomato
Experiments
Wheat
Submit Experiment Data
Search Experiments
Download Data
Tools
Your Account
Documentation
News
Links
Miscellaneous
 Data Release Policy 
PLEXdb is committed to making microarray data publicly available to researchers world-wide...
complete policy
 

Browse MedicagoPLEX Experiment Data

Choose an experiment:
The Medicago truncatula Gene Expression Atlas
Yuhong Tang, The Samuel Robert Noble Foundation (ytang@noble.org)
Experiment design (54 hybridizations)
organism part name
•Flower •Leaf •Nod4d •Nod10d •Nod14d •Nodule •Petiole •Pod •Root •Root-0d •Seed10d •Seed12d •Seed16d •Seed20d •Seed24d •Seed36d •Stem •VegetativeBud

This experiment has been imported from ArrayExpress. Description at ArrayExpress: "Medicago truncatula, which has a relatively small diploid g...[complete overview]

Experiment     Hybridizations & Samples     Treatments     Probesets     Scatterplots     Downloads    

Show
Experiment Name: The Medicago truncatula Gene Expression Atlas
Accession No: ME1
Microarray: Medicago61k
Visibility: public
Experiment Type:
Experiment Factor(s):
organism part name
•Flower   •Leaf   •Nod4d   •Nod10d   •Nod14d   •Nodule   •Petiole   •Pod   •Root   •Root-0d   •Seed10d   •Seed12d   •Seed16d   •Seed20d   •Seed24d   •Seed36d   •Stem   •VegetativeBud
Quality Control: biological replicates
Treatment summary:
 organism part name  # replicates
 Flower  3
 Leaf  3
 Nod4d  3
 Nod10d  3
 Nod14d  3
 Nodule  3
 Petiole  3
 Pod  3
 Root  3
 Root-0d  3
 Seed10d  3
 Seed12d  3
 Seed16d  3
 Seed20d  3
 Seed24d  3
 Seed36d  3
 Stem  3
 VegetativeBud  3
Total hybridizations: 54
Description: This experiment has been imported from ArrayExpress.

Description at ArrayExpress:
"Medicago truncatula, which has a relatively small diploid genome, has been adopted as a model species for legume genomics. To enhance its value as a model, we have generated a gene expression atlas that provides a global view of gene expression in all major organ systems of this species, with special emphasis on nodule and seed development."

Note:
The sample descriptions shown at PLEXdb have been extracted directly from Array express without any modification except for 'age'. The sample 'age' at PLEXdb is a combination of three sample fields at ArrayExpress, viz., 'Age', 'TimeUnit' and 'InitialTimePoint'.

For more details, please refer to ArrayExpress [Experiment : E-MEXP-1097], the experimenter's website, http://bioinfo.noble.org/gene-atlas/ and their publication.
Publication: 'A gene expression atlas of the model legume Medicago truncatula', Vagner Benedito, Ivone Torez-Jerez, Jeremy Murray, Andry Andriankaja, Stacey Allen, Klementina Kakar, Maren Wandrey, Jerome Verdier, Helene Zuber, Thomas Ott, Sandra Moreau, Andreas Niebel, Tancred Frickey, Georg Weiller, Ji He, Xinbin Dai, Patrick Zhao, Yuhong Tang, and Michael Udvardi
The Plant Journal
pubmed: 18410479
Created: 2008-09-10 12:22:28
Last Update: 2008-10-17 16:35:07
Submitter: Hong Lu
Experimenter:
Name: Yuhong Tang
Institution: The Samuel Robert Noble Foundation
Head of Laboratory: Michael K. Udvardi
email:
ytang@noble.org
Homepage:
http://bioinfo.noble.org/gene-atlas/index.php

 
Copyright@2001-2009 The PLEXdb Group
All rights reserved.

For problems with the webpages contact PLEXdb webmasters